{
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  "Package": "epiparameter",
  "Title": "Classes and Helper Functions for Working with Epidemiological\nParameters",
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  "Authors@R": "c(\nperson(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5218-3046\")),\nperson(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8814-9421\")),\nperson(\"Carmen\", \"Tamayo Cuartero\", , \"carmen.tamayo-cuartero@lshtm.ac.uk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-4184-2864\")),\nperson(\"Steve\", \"Kerr\", , , role = \"aut\",\ncomment = c(ORCID = \"0000-0001-8240-7899\")),\nperson(\"Hugo\", \"Gruson\", , \"hugo.gruson@data.org\", role = c(\"ctb\", \"rev\"),\ncomment = c(ORCID = \"0000-0002-4094-1476\")),\nperson(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-2842-3406\")),\nperson(\"Pratik\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = \"rev\",\ncomment = c(ORCID = \"0000-0001-5294-7819\")),\nperson(\"James M.\", \"Azam\", , \"james.azam@lshtm.ac.uk\", role = \"rev\",\ncomment = c(ORCID = \"0000-0001-5782-7330\")),\nperson(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\",\ncomment = c(ORCID = \"0000-0003-1050-6809\")),\nperson(\"Tim\", \"Taylor\", , \"tim.taylor@hiddenelephants.co.uk\", role = \"rev\",\ncomment = c(ORCID = \"0000-0002-8587-7113\")),\nperson(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\",\ncomment = c(ROR = \"00a0jsq62\"))\n)",
  "Description": "Classes and helper functions for loading, extracting,\nconverting, manipulating, plotting and aggregating\nepidemiological parameters for infectious diseases.\nEpidemiological parameters extracted from the literature are\nloaded from the 'epiparameterDB' R package.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/epiverse-trace/epiparameter/,\nhttps://epiverse-trace.github.io/epiparameter/",
  "BugReports": "https://github.com/epiverse-trace/epiparameter/issues",
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  "Repository": "https://epiverse-trace.r-universe.dev",
  "Date/Publication": "2026-09-28 13:07:41 UTC",
  "RemoteUrl": "https://github.com/epiverse-trace/epiparameter",
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  "Packaged": {
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    "User": "root"
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  "Author": "Joshua W. Lambert [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-5218-3046>),\nAdam Kucharski [aut, cph] (ORCID:\n<https://orcid.org/0000-0001-8814-9421>),\nCarmen Tamayo Cuartero [aut] (ORCID:\n<https://orcid.org/0000-0003-4184-2864>),\nSteve Kerr [aut] (ORCID: <https://orcid.org/0000-0001-8240-7899>),\nHugo Gruson [ctb, rev] (ORCID: <https://orcid.org/0000-0002-4094-1476>),\nSebastian Funk [ctb] (ORCID: <https://orcid.org/0000-0002-2842-3406>),\nPratik Gupte [rev] (ORCID: <https://orcid.org/0000-0001-5294-7819>),\nJames M. Azam [rev] (ORCID: <https://orcid.org/0000-0001-5782-7330>),\nChris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>),\nTim Taylor [rev] (ORCID: <https://orcid.org/0000-0002-8587-7113>),\nLondon School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR:\n<https://ror.org/00a0jsq62>)",
  "Maintainer": "Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>",
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    "epidemiology",
    "epiverse",
    "probability-distribution"
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/epiparameter.html",
    "extra/manual.pdf",
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    "extra/NEWS.txt",
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    "extra/readme.md",
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  "_homeurl": "https://github.com/epiverse-trace/epiparameter",
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      "date": "2025-01-08"
    },
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      "version": "0.4.1",
      "date": "2025-01-24"
    }
  ],
  "_exports": [
    "as_epiparameter",
    "assert_epiparameter",
    "calc_disc_dist_quantile",
    "cdf",
    "convert_params_to_summary_stats",
    "convert_summary_stats_to_params",
    "create_citation",
    "create_metadata",
    "create_method_assess",
    "create_prob_distribution",
    "create_region",
    "create_summary_stats",
    "create_uncertainty",
    "discretise",
    "discretize",
    "epiparameter",
    "epiparameter_db",
    "extract_param",
    "generate",
    "get_citation",
    "get_parameters",
    "is_continuous",
    "is_epiparameter",
    "is_epiparameter_params",
    "is_parameterised",
    "is_parameterized",
    "is_truncated",
    "parameter_tbl",
    "test_epiparameter"
  ],
  "_datasets": [
    {
      "name": "epireview_core_cols",
      "title": "A vector of 'character' strings with the core column names of the epidemiological parameter data exported by the 'epireview' R package.",
      "object": "epireview_core_cols",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "aggregate.multi_epiparameter",
      "title": "Aggregate multiple <epiparameter> objects into a single <epiparameter> object.",
      "topics": [
        "aggregate.multi_epiparameter"
      ]
    },
    {
      "page": "as_epiparameter",
      "title": "Convert to an <epiparameter> object",
      "topics": [
        "as_epiparameter"
      ]
    },
    {
      "page": "as_epiparameter.data.frame",
      "title": "Convert <data.frame> to an <epiparameter> object",
      "topics": [
        "as_epiparameter.data.frame"
      ]
    },
    {
      "page": "as.data.frame.epiparameter",
      "title": "'as.data.frame()' method for <epiparameter> class",
      "topics": [
        "as.data.frame.epiparameter"
      ]
    },
    {
      "page": "as.data.frame.multi_epiparameter",
      "title": "'as.data.frame()' method for <multi_epiparameter> class",
      "topics": [
        "as.data.frame.multi_epiparameter"
      ]
    },
    {
      "page": "as.function.epiparameter",
      "title": "'as.function()' method for <epiparameter> class",
      "topics": [
        "as.function.epiparameter"
      ]
    },
    {
      "page": "assert_epiparameter",
      "title": "Assert an object is a valid <epiparameter> object",
      "topics": [
        "assert_epiparameter"
      ]
    },
    {
      "page": "c.epiparameter",
      "title": "'c()' method for <epiparameter> class",
      "topics": [
        "c.epiparameter",
        "c.multi_epiparameter"
      ]
    },
    {
      "page": "calc_disc_dist_quantile",
      "title": "Calculate the quantiles of a probability distribution based on the vector of probabilities and time data (e.g. time since infection)",
      "topics": [
        "calc_disc_dist_quantile"
      ]
    },
    {
      "page": "convert_params_to_summary_stats",
      "title": "Convert the parameter(s) of a distribution to summary statistics",
      "topics": [
        "convert_params_to_summary_stats",
        "convert_params_to_summary_stats.character",
        "convert_params_to_summary_stats.epiparameter"
      ]
    },
    {
      "page": "convert_summary_stats_to_params",
      "title": "Convert the summary statistics of a distribution to parameters",
      "topics": [
        "convert_summary_stats_to_params",
        "convert_summary_stats_to_params.character",
        "convert_summary_stats_to_params.epiparameter"
      ]
    },
    {
      "page": "create_citation",
      "title": "Create a citation for an <epiparameter> object",
      "topics": [
        "create_citation"
      ]
    },
    {
      "page": "create_metadata",
      "title": "Specify metadata associated with data set",
      "topics": [
        "create_metadata"
      ]
    },
    {
      "page": "create_method_assess",
      "title": "Specify methodological aspects of distribution fitting",
      "topics": [
        "create_method_assess"
      ]
    },
    {
      "page": "create_prob_distribution",
      "title": "Create a distribution object",
      "topics": [
        "create_prob_distribution"
      ]
    },
    {
      "page": "create_region",
      "title": "Specify the geography of the data entry",
      "topics": [
        "create_region"
      ]
    },
    {
      "page": "create_summary_stats",
      "title": "Specify reported summary statistics",
      "topics": [
        "create_summary_stats"
      ]
    },
    {
      "page": "create_uncertainty",
      "title": "Specify distribution parameter uncertainty",
      "topics": [
        "create_uncertainty"
      ]
    },
    {
      "page": "discretise",
      "title": "Discretises a continuous distribution in an <epiparameter> object",
      "topics": [
        "discretise",
        "discretise.default",
        "discretise.epiparameter",
        "discretize"
      ]
    },
    {
      "page": "epiparameter",
      "title": "Create an <epiparameter> object",
      "topics": [
        "epiparameter"
      ]
    },
    {
      "page": "epiparameter_db",
      "title": "Create <epiparameter> object(s) directly from the epiparameter library (database)",
      "topics": [
        "epiparameter_db"
      ]
    },
    {
      "page": "epiparameter_default_options",
      "title": "Package options",
      "topics": [
        "epiparameter_default_options"
      ]
    },
    {
      "page": "epiparameter_distribution_functions",
      "title": "PDF, CDF, PMF, quantiles and random number generation for <epiparameter> objects",
      "topics": [
        "cdf.epiparameter",
        "density.epiparameter",
        "epiparameter_distribution_functions",
        "generate.epiparameter",
        "quantile.epiparameter"
      ]
    },
    {
      "page": "epireview_core_cols",
      "title": "A vector of 'character' strings with the core column names of the epidemiological parameter data exported by the 'epireview' R package.",
      "topics": [
        "epireview_core_cols"
      ]
    },
    {
      "page": "extract_param",
      "title": "Calculate the parameters of a parametric probability distribution from reported values of percentiles, or median and range",
      "topics": [
        "extract_param"
      ]
    },
    {
      "page": "family.epiparameter",
      "title": "Family method for the <epiparameter> class",
      "topics": [
        "family.epiparameter"
      ]
    },
    {
      "page": "format.epiparameter",
      "title": "Format method for <epiparameter> class",
      "topics": [
        "format.epiparameter"
      ]
    },
    {
      "page": "get_citation",
      "title": "Get citation from an object",
      "topics": [
        "get_citation"
      ]
    },
    {
      "page": "get_citation.epiparameter",
      "title": "Get citation from an <epiparameter> object",
      "topics": [
        "get_citation.epiparameter"
      ]
    },
    {
      "page": "get_citation.multi_epiparameter",
      "title": "Get citation from a list of <epiparameter> objects",
      "topics": [
        "get_citation.multi_epiparameter"
      ]
    },
    {
      "page": "get_parameters",
      "title": "Get parameters from an object",
      "topics": [
        "get_parameters"
      ]
    },
    {
      "page": "get_parameters.epiparameter",
      "title": "Get parameters from an <epiparameter> object",
      "topics": [
        "get_parameters.epiparameter",
        "get_parameters.multi_epiparameter"
      ]
    },
    {
      "page": "is_continuous",
      "title": "Check if distribution in <epiparameter> is continuous",
      "topics": [
        "is_continuous"
      ]
    },
    {
      "page": "is_epiparameter",
      "title": "Check object is an <epiparameter>",
      "topics": [
        "is_epiparameter"
      ]
    },
    {
      "page": "is_epiparameter_params",
      "title": "Check whether the vector of parameters for the probability distribution are in the set of possible parameters used in the epiparameter package",
      "topics": [
        "is_epiparameter_params"
      ]
    },
    {
      "page": "is_parameterised",
      "title": "Check if <epiparameter> or list of <epiparameter> objects contains a distribution and distribution parameters",
      "topics": [
        "is_parameterised",
        "is_parameterised.epiparameter",
        "is_parameterised.multi_epiparameter",
        "is_parameterized"
      ]
    },
    {
      "page": "is_truncated",
      "title": "Check if distribution in <epiparameter> is truncated",
      "topics": [
        "is_truncated"
      ]
    },
    {
      "page": "lines.epiparameter",
      "title": "'lines()' method for <epiparameter> class",
      "topics": [
        "lines.epiparameter"
      ]
    },
    {
      "page": "mean.epiparameter",
      "title": "Mean method for <epiparameter> class",
      "topics": [
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