{
  "_id": "6a4b86fca6574ff277f9c2a6",
  "Package": "linelist",
  "Title": "Tagging and Validating Epidemiological Data",
  "Version": "2.0.1.9000",
  "Authors@R": "c(\nperson(given = \"Hugo\",\nfamily = \"Gruson\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-4094-1476\")),\nperson(given = \"Thibaut\",\nfamily = \"Jombart\",\nrole = c(\"aut\", \"ccp\")),\nperson(given = \"Tim\",\nfamily = \"Taylor\",\nrole = \"ctb\"),\nperson(given = \"Chris\",\nfamily = \"Hartgerink\",\nrole = c(\"cre\", \"rev\"),\nemail = \"chris@data.org\",\ncomment = c(ORCID = \"0000-0003-1050-6809\"))\n)",
  "Description": "Provides tools to help storing and handling case line list\ndata. The 'linelist' class adds a tagging system to classical\n'data.frame' objects to identify key epidemiological data such\nas dates of symptom onset, epidemiological case definition,\nage, gender or disease outcome. Once tagged, these variables\ncan be seamlessly used in downstream analyses, making data\npipelines more robust and reliable.",
  "License": "MIT + file LICENSE",
  "URL": "https://epiverse-trace.github.io/linelist/,\nhttps://github.com/epiverse-trace/linelist",
  "BugReports": "https://github.com/epiverse-trace/linelist/issues",
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  "Config/Needs/website": "r-lib/pkgdown, epiverse-trace/epiversetheme",
  "VignetteBuilder": "knitr",
  "Language": "en-GB",
  "Repository": "https://epiverse-trace.r-universe.dev",
  "Date/Publication": "2026-06-06 14:45:27 UTC",
  "RemoteUrl": "https://github.com/epiverse-trace/linelist",
  "RemoteRef": "HEAD",
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  "Packaged": {
    "Date": "2026-07-06 10:41:14 UTC",
    "User": "root"
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  "Author": "Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>),\nThibaut Jombart [aut, ccp],\nTim Taylor [ctb],\nChris Hartgerink [cre, rev] (ORCID:\n<https://orcid.org/0000-0003-1050-6809>)",
  "Maintainer": "Chris Hartgerink <chris@data.org>",
  "_user": "epiverse-trace",
  "_type": "src",
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  "_created": "2026-07-06T10:41:14.000Z",
  "_published": "2026-07-06T10:44:12.440Z",
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    "committer": "Andree Valle Campos <avallecam@gmail.com>",
    "message": "docs(license): update copyright year(s)\n",
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    "login": "chartgerink",
    "mastodon": "@chartgerink@akademienl.social",
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      "week": "2025-28",
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    "data-structures",
    "epidemiology",
    "epiverse",
    "outbreaks",
    "sdg-3",
    "structured-data"
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  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/linelist.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
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    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
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  "_realowner": "epiverse-trace",
  "_cranurl": true,
  "_releases": [
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      "date": "2022-05-13"
    },
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      "version": "1.0.0",
      "date": "2023-10-19"
    },
    {
      "version": "1.1.0",
      "date": "2024-02-28"
    },
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      "date": "2024-04-19"
    },
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      "date": "2025-04-23"
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      "date": "2025-06-25"
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  "_exports": [
    "get_lost_tags_action",
    "has_tag",
    "lost_tags_action",
    "make_linelist",
    "set_tags",
    "tags",
    "tags_defaults",
    "tags_df",
    "tags_names",
    "tags_types",
    "validate_linelist",
    "validate_tags",
    "validate_types"
  ],
  "_help": [
    {
      "page": "sub_linelist",
      "title": "Subsetting of linelist objects",
      "topics": [
        "$<-.linelist",
        "sub_linelist",
        "[.linelist",
        "[<-.linelist",
        "[[<-.linelist"
      ]
    },
    {
      "page": "has_tag",
      "title": "A selector function to use in 'tidyverse' functions",
      "topics": [
        "has_tag"
      ]
    },
    {
      "page": "lost_tags_action",
      "title": "Check and set behaviour for lost tags",
      "topics": [
        "get_lost_tags_action",
        "lost_tags_action"
      ]
    },
    {
      "page": "make_linelist",
      "title": "Create a linelist from a data.frame",
      "topics": [
        "make_linelist"
      ]
    },
    {
      "page": "names-set-.linelist",
      "title": "Rename columns of a linelist",
      "topics": [
        "names<-.linelist"
      ]
    },
    {
      "page": "print.linelist",
      "title": "Printing method for linelist objects",
      "topics": [
        "print.linelist"
      ]
    },
    {
      "page": "set_tags",
      "title": "Changes tags of a linelist object",
      "topics": [
        "set_tags"
      ]
    },
    {
      "page": "tags",
      "title": "Get the list of tags in a linelist",
      "topics": [
        "tags"
      ]
    },
    {
      "page": "tags_defaults",
      "title": "Generate default tags for a linelist",
      "topics": [
        "tags_defaults"
      ]
    },
    {
      "page": "tags_df",
      "title": "Extract a data.frame of all tagged variables",
      "topics": [
        "tags_df"
      ]
    },
    {
      "page": "tags_names",
      "title": "Get the list of tag names used in linelist",
      "topics": [
        "tags_names"
      ]
    },
    {
      "page": "tags_types",
      "title": "List acceptable variable types for tags",
      "topics": [
        "tags_types"
      ]
    },
    {
      "page": "validate_linelist",
      "title": "Checks the content of a linelist object",
      "topics": [
        "validate_linelist"
      ]
    },
    {
      "page": "validate_tags",
      "title": "Checks the tags of a linelist object",
      "topics": [
        "validate_tags"
      ]
    },
    {
      "page": "validate_types",
      "title": "Check tagged variables are the right class",
      "topics": [
        "validate_types"
      ]
    }
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        "Internet access",
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