{ "_id": "6a532f7f9b92047c28d564d7", "Package": "superspreading", "Title": "Understand Individual-Level Variation in Infectious Disease\nTransmission", "Version": "0.4.0.9000", "Authors@R": "c(\nperson(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5218-3046\")),\nperson(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8814-9421\")),\nperson(\"Dillon C.\", \"Adam\", , \"dcadam@hku.hk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-7485-9905\")),\nperson(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = c(\"ctb\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-2842-3406\", \".chain_sim uses code from bpmodels::chain_sim\")),\nperson(\"Pratik\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = \"rev\",\ncomment = c(ORCID = \"0000-0001-5294-7819\")),\nperson(\"Hugo\", \"Gruson\", , \"hugo@data.org\", role = \"rev\",\ncomment = c(ORCID = \"0000-0002-4094-1476\")),\nperson(\"James M.\", \"Azam\", , \"james.azam@lshtm.ac.uk\", role = c(\"rev\", \"ctb\"),\ncomment = c(ORCID = \"0000-0001-5782-7330\")),\nperson(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\",\ncomment = c(ORCID = \"0000-0003-1050-6809\")),\nperson(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\",\ncomment = c(ROR = \"00a0jsq62\"))\n)", "Description": "Estimate and understand individual-level variation in\ntransmission. Implements density and cumulative compound\nPoisson discrete distribution functions (Kremer et al. (2021)\n), as well as functions to\ncalculate infectious disease outbreak statistics given\nepidemiological parameters on individual-level transmission;\nincluding the probability of an outbreak becoming an\nepidemic/extinct (Kucharski et al. (2020)\n), or the cluster size\nstatistics, e.g. what proportion of cases cause X\\% of\ntransmission (Lloyd-Smith et al. (2005)\n).", "License": "MIT + file LICENSE", "URL": "https://github.com/epiverse-trace/superspreading,\nhttps://epiverse-trace.github.io/superspreading/", "BugReports": "https://github.com/epiverse-trace/superspreading/issues", "VignetteBuilder": "knitr", "Config/Needs/website": "epiverse-trace/epiversetheme", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-GB", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Repository": "https://epiverse-trace.r-universe.dev", "Date/Publication": "2026-04-13 09:08:26 UTC", "RemoteUrl": "https://github.com/epiverse-trace/superspreading", "RemoteRef": "HEAD", "RemoteSha": "e76d7b4101a3dd0f28909f42031f6563d39b8167", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-12 06:05:02 UTC", "User": "root" }, "Author": "Joshua W. Lambert [aut, cre, cph] (ORCID:\n),\nAdam Kucharski [aut, cph] (ORCID:\n),\nDillon C. Adam [aut] (ORCID: ),\nSebastian Funk [ctb, cph] (ORCID:\n, .chain_sim uses code from\nbpmodels::chain_sim),\nPratik Gupte [rev] (ORCID: ),\nHugo Gruson [rev] (ORCID: ),\nJames M. Azam [rev, ctb] (ORCID:\n),\nChris Hartgerink [rev] (ORCID: ),\nLondon School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR:\n)", "Maintainer": "Joshua W. Lambert ", "_user": "epiverse-trace", "_type": "src", "_file": "superspreading_0.4.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/3838df961ccb50b582eefbd507af42e0bd79afd073f368421fea8f8b8e58698d", "_filesize": 1611973, "_sha256": "3838df961ccb50b582eefbd507af42e0bd79afd073f368421fea8f8b8e58698d", "_expires": "2026-10-20T06:09:00.000Z", "_created": "2026-07-12T06:05:02.000Z", "_published": "2026-07-12T06:09:03.061Z", "_jobs": [ { "job": 86621659455, "time": 180, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8256781473" }, { "job": 86621659480, "time": 200, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8256784180" }, { "job": 86621659452, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8256769911" }, { "job": 86621659449, "time": 128, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8256773806" }, { "job": 86621399328, "time": 207, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8256754604" }, { "job": 86621659462, "time": 115, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8256771817" }, { "job": 86621659489, "time": 129, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8256773966" }, { "job": 86621659444, "time": 118, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8256772160" }, { "job": 86621659459, "time": 131, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8256774060" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/epiverse-trace/actions/runs/29182028269", "_status": "success", "_upstream": "https://github.com/epiverse-trace/superspreading", "_commit": { "id": "e76d7b4101a3dd0f28909f42031f6563d39b8167", "author": "dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>", "committer": "Joshua Lambert ", "message": "Bump codecov/codecov-action from 5 to 6\n\nBumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 5 to 6.\n- [Release notes](https://github.com/codecov/codecov-action/releases)\n- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)\n- [Commits](https://github.com/codecov/codecov-action/compare/v5...v6)\n\n---\nupdated-dependencies:\n- dependency-name: codecov/codecov-action\n dependency-version: '6'\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ", "time": 1776071306 }, "_maintainer": { "name": "Joshua W. 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