{ "_id": "6ac65bb3db3f88320e13f49e", "Package": "superspreading", "Title": "Understand Individual-Level Variation in Infectious Disease\nTransmission", "Version": "0.4.0.9000", "Authors@R": "c(\nperson(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5218-3046\")),\nperson(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8814-9421\")),\nperson(\"Dillon C.\", \"Adam\", , \"dcadam@hku.hk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-7485-9905\")),\nperson(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = c(\"ctb\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-2842-3406\", \".chain_sim uses code from bpmodels::chain_sim\")),\nperson(\"Pratik\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = \"rev\",\ncomment = c(ORCID = \"0000-0001-5294-7819\")),\nperson(\"Hugo\", \"Gruson\", , \"hugo@data.org\", role = \"rev\",\ncomment = c(ORCID = \"0000-0002-4094-1476\")),\nperson(\"James M.\", \"Azam\", , \"james.azam@lshtm.ac.uk\", role = c(\"rev\", \"ctb\"),\ncomment = c(ORCID = \"0000-0001-5782-7330\")),\nperson(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\",\ncomment = c(ORCID = \"0000-0003-1050-6809\")),\nperson(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\",\ncomment = c(ROR = \"00a0jsq62\"))\n)", "Description": "Estimate and understand individual-level variation in\ntransmission. Implements density and cumulative compound\nPoisson discrete distribution functions (Kremer et al. (2021)\n), as well as functions to\ncalculate infectious disease outbreak statistics given\nepidemiological parameters on individual-level transmission;\nincluding the probability of an outbreak becoming an\nepidemic/extinct (Kucharski et al. (2020)\n), or the cluster size\nstatistics, e.g. what proportion of cases cause X\\% of\ntransmission (Lloyd-Smith et al. (2005)\n).", "License": "MIT + file LICENSE", "URL": "https://github.com/epiverse-trace/superspreading,\nhttps://epiverse-trace.github.io/superspreading/", "BugReports": "https://github.com/epiverse-trace/superspreading/issues", "VignetteBuilder": "knitr", "Config/Needs/website": "epiverse-trace/epiversetheme", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-GB", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Repository": "https://epiverse-trace.r-universe.dev", "Date/Publication": "2026-09-07 11:36:23 UTC", "RemoteUrl": "https://github.com/epiverse-trace/superspreading", "RemoteRef": "HEAD", "RemoteSha": "e486617b5cfe4ec349d1e38d5e4f95b25f93f5ce", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 13:08:16 UTC", "User": "root" }, "Author": "Joshua W. Lambert [aut, cre, cph] (ORCID:\n),\nAdam Kucharski [aut, cph] (ORCID:\n),\nDillon C. Adam [aut] (ORCID: ),\nSebastian Funk [ctb, cph] (ORCID:\n, .chain_sim uses code from\nbpmodels::chain_sim),\nPratik Gupte [rev] (ORCID: ),\nHugo Gruson [rev] (ORCID: ),\nJames M. Azam [rev, ctb] (ORCID:\n),\nChris Hartgerink [rev] (ORCID: ),\nLondon School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR:\n)", "Maintainer": "Joshua W. Lambert ", "_user": "epiverse-trace", "_type": "src", "_file": "superspreading_0.4.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/a020851e015d0fabd3d74397d9f8d7e1026533d9f003faf4ab616a90471b320d", "_filesize": 1606303, "_sha256": "a020851e015d0fabd3d74397d9f8d7e1026533d9f003faf4ab616a90471b320d", "_expires": "2027-01-15T14:48:17.000Z", "_created": "2026-10-07T13:08:16.000Z", "_published": "2026-10-07T14:48:19.500Z", "_buildurl": "https://github.com/r-universe/epiverse-trace/actions/runs/37625588996", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112808476538, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11483409582" }, { "job": 112808476338, "time": 148, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11483714407" }, { "job": 112808476273, "time": 148, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11490864738" }, { "job": 112808476170, "time": 179, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11491546018" }, { "job": 112806646648, "time": 247, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11483494231" }, { "job": 112808476358, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11483364655" }, { "job": 112808476377, "time": 128, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11483734134" }, { "job": 112808476450, "time": 173, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11483789271" }, { "job": 112808476388, "time": 124, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11484790290" } ], "_upstream": "https://github.com/epiverse-trace/superspreading", "_commit": { "id": "e486617b5cfe4ec349d1e38d5e4f95b25f93f5ce", "author": "joshwlambert <46606402+joshwlambert@users.noreply.github.com>", "committer": "Joshua Lambert ", "message": "Update `CITATION.cff`\n", "time": 1788780983 }, "_maintainer": { "name": "Joshua W. 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