Package: sivirep
Title: Data Wrangling and Automated Reports from 'SIVIGILA' Source
Type: Package
Version: 1.0.2
Authors@R: 
  c(
    person(given = "Geraldine", family = "Gómez-Millán", email = "geralidine.gomez@javeriana.edu.co", role = c("aut", "cre", "ctb"),
        comment = c(ORCID = "0009-0007-8701-0568")),
    person(given = "Zulma M.", family = "Cucunubá", email = "zulma.cucunuba@javeriana.edu.co", role = c("aut", "ctb"),
        comment = c(ORCID = "0000-0002-8165-3198")),
    person(given = "Jennifer A.", family = "Mendez-Romero", email = "jenniferk2@hotmail.com", role = c("aut", "ctb"),
        comment = c(ORCID = "0009-0001-6138-0225")),
    person(given = "Claudia", family = "Huguett-Aragón", email = "chuguett@hotmail.com", role = c("aut", "ctb"),
        comment = c(ORCID = "0000-0002-9814-2386")),
    person(given = "Hugo", family = "Gruson", email = "hugo.gruson+R@normalesup.org", role = "ctb",
        comment = c(ORCID = "0000-0002-4094-1476")),
    person(given = "Juanita", family = "Romero-Garcés", email = "juanita.romerog@javeriana.edu.co", role = "ctb",
        comment = c(ORCID = "0000-0001-9796-6626")),
    person(given = "Jaime", family = "Pavlich-Mariscal", email = "jpavlich@javeriana.edu.co", role = "ctb",
           comment = c(ORCID = "0000-0002-3892-6680")),
    person(given = "Laura", family = "Gómez Bermeo", email = "gomezblaura@javeriana.edu.co", role = "ctb",
        comment = c(ORCID = "0000-0003-4028-2893")),
    person(given = "Andrés", family = "Moreno", email = "ad.morenob@javeriana.edu.co", role = "ctb",
        comment = c(ORCID = "0000-0001-9266-731X")),
    person(given = "Miguel", family = "Gámez", role = "ctb"),
    person(given = "Johan", family = "Calderón", role = "ctb"),
    person(given = "Lady", family = "Flórez-Tapiero", role = "ctb"),
    person(given = "Verónica", family = "Tangarife-Arredondo", role = "ctb"),
    person(given = "Gerard", family = "Alarcon", role = "ctb"),
    person("International Development Research Center (IDRC)", role = "fnd",
           comment = c(ROR = "0445x0472")),
    person("Pontificia Universidad Javeriana", role = "cph",
           comment = c(ROR = "03etyjw28"))
  )
Description: Data wrangling, pre-processing, and generating automated
        reports from Colombia's epidemiological surveillance system,
        'SIVIGILA' <https://portalsivigila.ins.gov.co/>. It provides a
        customizable R Markdown template for analysis and automatic
        generation of epidemiological reports that can be adapted to
        local, regional, and national contexts. This tool offers a
        standardized and reproducible workflow that helps to reduce
        manual labor and potential errors in report generation,
        improving their efficiency and consistency.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Imports: config, dplyr, ggplot2, httr2, kableExtra, readxl, rlang, sf,
        showtext, stats, stringi, stringr, sysfonts, tools, utils, xml2
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)
Depends: R (>= 4.0.0)
Config/Needs/website: r-lib/pkgdown, epiverse-trace/epiversetheme
VignetteBuilder: knitr
Language: es-ES
URL: https://epiverse-trace.github.io/sivirep/,
        https://github.com/epiverse-trace/sivirep
BugReports: https://github.com/epiverse-trace/sivirep/issues
Config/testthat/edition: 3
Config/pak/sysreqs: libabsl-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev zlib1g-dev
Repository: https://epiverse-trace.r-universe.dev
Date/Publication: 2026-02-04 19:44:46 UTC
RemoteUrl: https://github.com/epiverse-trace/sivirep
RemoteRef: HEAD
RemoteSha: 3c2051f000dd06f274d667d1d301ac74fc9e02d4
NeedsCompilation: no
Packaged: 2026-06-04 07:47:55 UTC; root
Author: Geraldine Gómez-Millán [aut, cre, ctb] (ORCID:
    <https://orcid.org/0009-0007-8701-0568>),
  Zulma M. Cucunubá [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-8165-3198>),
  Jennifer A. Mendez-Romero [aut, ctb] (ORCID:
    <https://orcid.org/0009-0001-6138-0225>),
  Claudia Huguett-Aragón [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-9814-2386>),
  Hugo Gruson [ctb] (ORCID: <https://orcid.org/0000-0002-4094-1476>),
  Juanita Romero-Garcés [ctb] (ORCID:
    <https://orcid.org/0000-0001-9796-6626>),
  Jaime Pavlich-Mariscal [ctb] (ORCID:
    <https://orcid.org/0000-0002-3892-6680>),
  Laura Gómez Bermeo [ctb] (ORCID:
    <https://orcid.org/0000-0003-4028-2893>),
  Andrés Moreno [ctb] (ORCID: <https://orcid.org/0000-0001-9266-731X>),
  Miguel Gámez [ctb],
  Johan Calderón [ctb],
  Lady Flórez-Tapiero [ctb],
  Verónica Tangarife-Arredondo [ctb],
  Gerard Alarcon [ctb],
  International Development Research Center (IDRC) [fnd] (ROR:
    <https://ror.org/0445x0472>),
  Pontificia Universidad Javeriana [cph] (ROR:
    <https://ror.org/03etyjw28>)
Maintainer: Geraldine Gómez-Millán <geralidine.gomez@javeriana.edu.co>