This patch release includes the following improvements and fixes:
Updated and added new lintr validations to ensure consistent code quality.
Fixed pattern matching in import_data_event function and validations;
added a reference to list_events in the documentation.
Added a handler on Report template skeleton to display warning or errors
from import_data_event and geo_filtro functions during report rendering,
based on input parameters.
Added a reference to the Analisis Personalizados article in REAMDE file
and Getting Started guide.
Included a note highlighting the requirement of an Internet connection on
the firs use in all functions that import or download data.
Created English-language articles introducing to Custom Analysis workflow
and an overview of sivirep package.
Added warning messages in geo_filtro when there is no data for a specific
municipality or department, and included a reference to import_geo_cods.
This patch release fixes the following items:
es_ES was replaced with es-ES in the DESCRIPTION file.
Updated function examples that require data import and
use the cache parameter to prevent an increase in the package's size
on CRAN.
Rename the report template Reporte Basico to Reporte Evento
This major release introduces a variety of significant new features and addresses bugs identified in previous versions of the package. The updates are based on usability testing and the expert review process conducted with Colombia's National Institute of Health.
Set of functions to import, group, and plot the incidence calculations of a specific disease or event for Colombia, departments, or municipalities
import_pob_incidencia()import_pob_proyecciones()import_pob_riesgo()calcular_incidencia()calcular_incidencia_geo()calcular_incidencia_sex()plot_tabla_incidencia_geo()plot_tabla_incidencia_sex()Functions to generated the cases distribution, and plot of the ethnicity groups related to a specific disease or event
agrupar_per_etn()plot_per_etn()Functions to group, and plot the initial classification of cases
agrupar_tipo_caso()plot_tipo_caso()plot_tipo_caso_years()Functions to generate the distribution of cases, and plot across multiple years
agrupar_years()plot_years()Functions to generate the distribution of cases by event type
agrupar_events()plot_tabla_tipos_event()Functions to generate and plot the distribution of cases by geographic area, including top departments or municipalities.
agrupar_area_geo()agrupar_top_area_geo()plot_area_geoplot_top_area_geoThe report template Reporte Evento now includes five new sections called:
Distribución de casosDistribución de casos por clasificaciónDistribución por área geográficaDistribución por pertenencia étnicaIncidenciaThis version includes a complete refactoring of the package, an R Markdown template called Reporte Basico to facilitate report generation for users, bug fixes, and various improvements identified from user testing conducted with the Secretariat of Health of Bogotá, health professionals and students from the Technological University of Chocó, and expert reviews carried out by the Colombia's National Institute of Health.
The modules represent the data flow that the user must follow to generate the automated report, and the functions represent the key variables to be considered for generating a descriptive analysis that facilitates decision-making and the obtaining of key indicators defined in the protocols of events or diseases by the Colombia's National Institute of Health.
This is the initial version of the package. It contains four modules which are as follows:
import_data: contains the functions and logic to import data from SIVIGILAchecking_data: groups the functions that allow generating distributions of casescleaning_data: contains the set of functions that enable data cleaningplotting_data: contains the set of functions that allow generating distribution plots