Package: cleanepi 1.0.2.9000

Karim Mané

cleanepi: Clean and Standardize Epidemiological Data

Cleaning and standardizing tabular data package, tailored specifically for curating epidemiological data. It streamlines various data cleaning tasks that are typically expected when working with datasets in epidemiology. It returns the processed data in the same format, ensuring seamless integration into existing workflows. Additionally, it generates a comprehensive report detailing the outcomes of each cleaning task.

Authors:Karim Mané [aut, cre], Thibaut Jombart [ctb], Abdoelnaser Degoot [aut], Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut], Hugo Gruson [rev], Pratik R. Gupte [rev], James M. Azam [rev], Joshua W. Lambert [rev], Chris Hartgerink [rev], London School of Hygiene and Tropical Medicine, LSHTM [cph], data.org [fnd]

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cleanepi.pdf |cleanepi.html✨
cleanepi/json (API)
NEWS

# Install 'cleanepi' in R:
install.packages('cleanepi', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiverse-trace/cleanepi/issues

Datasets:

On CRAN:

data-cleaningepidemiologyepiverse

19 exports 8 stars 7.09 score 41 dependencies 11 scripts 222 downloads

Last updated 3 days agofrom:771f3886f8. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 08 2024
R-4.5-winOKOct 08 2024
R-4.5-linuxOKOct 08 2024
R-4.4-winOKOct 08 2024
R-4.4-macOKOct 08 2024
R-4.3-winOKOct 08 2024
R-4.3-macOKOct 08 2024

Exports:%>%add_to_dictionaryadd_to_reportcheck_date_sequencecheck_subject_idsclean_dataclean_using_dictionaryconvert_numeric_to_dateconvert_to_numericcorrect_subject_idsfind_duplicatesprint_reportremove_constantsremove_duplicatesreplace_missing_valuesscan_datastandardize_column_namesstandardize_datestimespan

Dependencies:backportsbitbit64checkmateclicliprcpp11crayondplyrfansiforcatsgenericsgluehmsjanitorlifecyclelinelistlubridatemagrittrmatchmakernumberizepillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithr

Introduction to cleanepi

Rendered fromcleanepi.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-10-03
Started: 2023-03-07

Package Design vignette for {cleanepi}

Rendered fromdesign_principle.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-09-02
Started: 2024-01-20