Package: cleanepi 1.1.0.9000

Karim Mané

cleanepi: Clean and Standardize Epidemiological Data

Cleaning and standardizing tabular data package, tailored specifically for curating epidemiological data. It streamlines various data cleaning tasks that are typically expected when working with datasets in epidemiology. It returns the processed data in the same format, and generates a comprehensive report detailing the outcomes of each cleaning task.

Authors:Karim Mané [aut, cre], Thibaut Jombart [ctb], Abdoelnaser Degoot [aut], Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut], Hugo Gruson [ctb, rev], Pratik R. Gupte [rev], James M. Azam [rev], Joshua W. Lambert [rev], Chris Hartgerink [rev], Andree Valle-Campos [rev, ctb], London School of Hygiene and Tropical Medicine, LSHTM [cph], data.org [fnd]

cleanepi_1.1.0.9000.tar.gz
cleanepi_1.1.0.9000.zip(r-4.5)cleanepi_1.1.0.9000.zip(r-4.4)cleanepi_1.1.0.9000.zip(r-4.3)
cleanepi_1.1.0.9000.tgz(r-4.5-any)cleanepi_1.1.0.9000.tgz(r-4.4-any)cleanepi_1.1.0.9000.tgz(r-4.3-any)
cleanepi_1.1.0.9000.tar.gz(r-4.5-noble)cleanepi_1.1.0.9000.tar.gz(r-4.4-noble)
cleanepi_1.1.0.9000.tgz(r-4.4-emscripten)cleanepi_1.1.0.9000.tgz(r-4.3-emscripten)
cleanepi.pdf |cleanepi.html✨
cleanepi/json (API)
NEWS

# Install 'cleanepi' in R:
install.packages('cleanepi', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiverse-trace/cleanepi/issues

Pkgdown site:https://epiverse-trace.github.io

Datasets:

On CRAN:

Conda:

data-cleaningepidemiologyepiverse

7.39 score 8 stars 19 scripts 341 downloads 20 exports 41 dependencies

Last updated 3 days agofrom:bc188a70d0. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 21 2025
R-4.5-winOKMar 21 2025
R-4.5-macOKMar 21 2025
R-4.5-linuxOKMar 21 2025
R-4.4-winOKMar 21 2025
R-4.4-macOKMar 21 2025
R-4.4-linuxOKMar 21 2025
R-4.3-winOKMar 21 2025
R-4.3-macOKMar 21 2025

Exports:%>%add_to_dictionaryadd_to_reportcheck_date_sequencecheck_subject_idsclean_dataclean_using_dictionaryconvert_numeric_to_dateconvert_to_numericcorrect_subject_idsfind_duplicatesget_default_paramsprint_reportremove_constantsremove_duplicatesreplace_missing_valuesscan_datastandardize_column_namesstandardize_datestimespan

Dependencies:backportsbitbit64checkmateclicliprcpp11crayondplyrfansiforcatsgenericsgluehmsjanitorlifecyclelinelistlubridatemagrittrmatchmakernumberizepillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithr

Introduction to cleanepi

Rendered fromcleanepi.Rmdusingknitr::rmarkdownon Mar 21 2025.

Last update: 2025-02-26
Started: 2023-03-07

Package Design vignette for {cleanepi}

Rendered fromdesign_principle.Rmdusingknitr::rmarkdownon Mar 21 2025.

Last update: 2025-03-14
Started: 2024-01-20