Package: cleanepi 1.0.2.9000

Karim Mané

cleanepi: Clean and Standardize Epidemiological Data

Cleaning and standardizing tabular data package, tailored specifically for curating epidemiological data. It streamlines various data cleaning tasks that are typically expected when working with datasets in epidemiology. It returns the processed data in the same format, ensuring seamless integration into existing workflows. Additionally, it generates a comprehensive report detailing the outcomes of each cleaning task.

Authors:Karim Mané [aut, cre], Thibaut Jombart [ctb], Abdoelnaser Degoot [aut], Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut], Hugo Gruson [ctb, rev], Pratik R. Gupte [rev], James M. Azam [rev], Joshua W. Lambert [rev], Chris Hartgerink [rev], Andree Valle-Campos [rev, ctb], London School of Hygiene and Tropical Medicine, LSHTM [cph], data.org [fnd]

cleanepi_1.0.2.9000.tar.gz
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cleanepi_1.0.2.9000.tgz(r-4.4-any)cleanepi_1.0.2.9000.tgz(r-4.3-any)
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cleanepi.pdf |cleanepi.html✨
cleanepi/json (API)
NEWS

# Install 'cleanepi' in R:
install.packages('cleanepi', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiverse-trace/cleanepi/issues

Pkgdown site:https://epiverse-trace.github.io

Datasets:

On CRAN:

data-cleaningepidemiologyepiverse

7.30 score 8 stars 18 scripts 237 downloads 19 exports 41 dependencies

Last updated 3 months agofrom:4f4b9f6aea. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 23 2025
R-4.5-winOKJan 23 2025
R-4.5-linuxOKJan 23 2025
R-4.4-winOKJan 23 2025
R-4.4-macOKJan 23 2025
R-4.3-winOKJan 23 2025
R-4.3-macOKJan 23 2025

Exports:%>%add_to_dictionaryadd_to_reportcheck_date_sequencecheck_subject_idsclean_dataclean_using_dictionaryconvert_numeric_to_dateconvert_to_numericcorrect_subject_idsfind_duplicatesprint_reportremove_constantsremove_duplicatesreplace_missing_valuesscan_datastandardize_column_namesstandardize_datestimespan

Dependencies:backportsbitbit64checkmateclicliprcpp11crayondplyrfansiforcatsgenericsgluehmsjanitorlifecyclelinelistlubridatemagrittrmatchmakernumberizepillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithr

Introduction to cleanepi

Rendered fromcleanepi.Rmdusingknitr::rmarkdownon Jan 23 2025.

Last update: 2024-10-25
Started: 2023-03-07

Package Design vignette for {cleanepi}

Rendered fromdesign_principle.Rmdusingknitr::rmarkdownon Jan 23 2025.

Last update: 2024-10-25
Started: 2024-01-20