Package: epiCo 1.0.0
Juan D. Umaña
epiCo: Statistical and Viz Tools for Vector-Borne Diseases in Colombia
Provides statistical and visualization tools for the analysis of demographic indicators, and spatio-temporal behavior and characterization of outbreaks of vector-borne diseases (VBDs) in Colombia. It implements travel times estimated in Bravo-Vega C., Santos-Vega M., & Cordovez J.M. (2022), and the endemic channel method (Bortman, M. (1999) <https://iris.paho.org/handle/10665.2/8562>).
Authors:
epiCo_1.0.0.tar.gz
epiCo_1.0.0.zip(r-4.5)epiCo_1.0.0.zip(r-4.4)epiCo_1.0.0.zip(r-4.3)
epiCo_1.0.0.tgz(r-4.4-any)epiCo_1.0.0.tgz(r-4.3-any)
epiCo_1.0.0.tar.gz(r-4.5-noble)epiCo_1.0.0.tar.gz(r-4.4-noble)
epiCo_1.0.0.tgz(r-4.4-emscripten)epiCo_1.0.0.tgz(r-4.3-emscripten)
epiCo.pdf |epiCo.html✨
epiCo/json (API)
NEWS
| # Install 'epiCo' in R: |
| install.packages('epiCo', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/epico/issues
- divipola_table - Divipola_table
- epi_data - Epi_data
- isco88_table - Isco88_table
colombiadecision-supportdemographicsepiverseoutbreak-analysisspatio-temporal-analysisvector-borne-diseases
Last updated 3 days agofrom:5215001615. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win | OK | Nov 14 2024 |
| R-4.5-linux | OK | Nov 14 2024 |
| R-4.4-win | OK | Nov 14 2024 |
| R-4.4-mac | OK | Nov 14 2024 |
| R-4.3-win | OK | Nov 14 2024 |
| R-4.3-mac | OK | Nov 14 2024 |
Exports:age_riskdescribe_ethnicitydescribe_occupationendemic_channelepi_calendargeometric_meangeometric_sdincidence_ratemorans_indexneighborhoodspopulation_pyramid
Dependencies:aweekbase64encbootbslibcachemclassclassIntclicolorspacecommonmarkcpp11crosstalkcurlDBIdeldirdigestdplyre1071evaluatefansifarverfastmapfontawesomefsgenericsggfittextggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragridtextgtablehighrhtmltoolshtmlwidgetsigraphincidenceisobandjpegjquerylibjsonliteKernSmoothknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpngpolyclipproxypurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloRcppEigenrlangrmarkdowns2sassscalessfshadesspspDataspdepstringistringrsystemfontsterratibbletidygraphtidyrtidyselecttimechangetinytextreemapifytweenrunitsutf8vctrsviridisviridisLitewithrwkxfunxml2yaml
Analyzing demographic data with epiCo
Rendered fromdemographic_vignette.Rmdusingknitr::rmarkdownon Nov 14 2024.Last update: 2024-10-07
Started: 2023-10-13
Building an Endemic Channel with epiCo
Rendered fromendemic_channel.Rmdusingknitr::rmarkdownon Nov 14 2024.Last update: 2024-10-08
Started: 2023-10-13
Spatiotemporal analyses with epiCo
Rendered fromspatiotemporal_vignette.Rmdusingknitr::rmarkdownon Nov 14 2024.Last update: 2024-08-14
Started: 2023-10-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Returns the specific rates associated with being infected given age and sex | age_risk |
| Provides the sociological description of ethnicities in Colombia | describe_ethnicity |
| Get ISCO-88 occupation labels from codes | describe_occupation |
| divipola_table | divipola_table |
| Create and return the endemic channel of a disease from an incidence object | endemic_channel |
| Get the epidemiological calendar of a consulted year. | epi_calendar |
| epi_data | epi_data |
| Returns the geometric mean of a vector of real numbers. | geometric_mean |
| Returns the geometric standard deviation of a vector of real numbers. | geometric_sd |
| Extends an incidence class object with incidence rates estimations. | incidence_rate |
| isco88_table | isco88_table |
| Calculate spatial correlation of given municipalities in an incidence_rate object. | morans_index |
| Neighborhoods from real travel distances in Colombia | neighborhoods |
| Returns the population pyramid of the consulted region | population_pyramid |
