Package: epiCo 1.0.0

Juan D. Umaña

epiCo: Statistical and Viz Tools for Vector-Borne Diseases in Colombia

Provides statistical and visualization tools for the analysis of demographic indicators, and spatio-temporal behavior and characterization of outbreaks of vector-borne diseases (VBDs) in Colombia. It implements travel times estimated in Bravo-Vega C., Santos-Vega M., & Cordovez J.M. (2022), and the endemic channel method (Bortman, M. (1999) <https://iris.paho.org/handle/10665.2/8562>).

Authors:Juan D. Umaña [aut, cre, cph], Juan Montenegro-Torres [aut], Julian Otero [aut], Hugo Gruson [ctb]

epiCo_1.0.0.tar.gz
epiCo_1.0.0.zip(r-4.5)epiCo_1.0.0.zip(r-4.4)epiCo_1.0.0.zip(r-4.3)
epiCo_1.0.0.tgz(r-4.4-any)epiCo_1.0.0.tgz(r-4.3-any)
epiCo_1.0.0.tar.gz(r-4.5-noble)epiCo_1.0.0.tar.gz(r-4.4-noble)
epiCo_1.0.0.tgz(r-4.4-emscripten)epiCo_1.0.0.tgz(r-4.3-emscripten)
epiCo.pdf |epiCo.html
epiCo/json (API)
NEWS

# Install 'epiCo' in R:
install.packages('epiCo', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiverse-trace/epico/issues

Datasets:

On CRAN:

colombiadecision-supportdemographicsepiverseoutbreak-analysisspatio-temporal-analysisvector-borne-diseases

11 exports 11 stars 6.93 score 107 dependencies 7 scripts 200 downloads

Last updated 2 days agofrom:0ab2f830c3. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 08 2024
R-4.5-winOKOct 08 2024
R-4.5-linuxOKOct 08 2024
R-4.4-winOKOct 08 2024
R-4.4-macOKOct 08 2024
R-4.3-winOKOct 08 2024
R-4.3-macOKOct 08 2024

Exports:age_riskdescribe_ethnicitydescribe_occupationendemic_channelepi_calendargeometric_meangeometric_sdincidence_ratemorans_indexneighborhoodspopulation_pyramid

Dependencies:aweekbase64encbootbslibcachemclassclassIntclicolorspacecommonmarkcpp11crosstalkcurlDBIdeldirdigestdplyre1071evaluatefansifarverfastmapfontawesomefsgenericsggfittextggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragridtextgtablehighrhtmltoolshtmlwidgetsigraphincidenceisobandjpegjquerylibjsonliteKernSmoothknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpngpolyclipproxypurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloRcppEigenrlangrmarkdowns2sassscalessfshadesspspDataspdepstringistringrsystemfontsterratibbletidygraphtidyrtidyselecttimechangetinytextreemapifytweenrunitsutf8vctrsviridisviridisLitewithrwkxfunxml2yaml

Analyzing demographic data with epiCo

Rendered fromdemographic_vignette.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-10-07
Started: 2023-10-13

Building an Endemic Channel with epiCo

Rendered fromendemic_channel.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-10-08
Started: 2023-10-13

Spatiotemporal analyses with epiCo

Rendered fromspatiotemporal_vignette.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-08-14
Started: 2023-10-13