Package: epidemics 0.4.0.9000
Rosalind Eggo
epidemics: Composable Epidemic Scenario Modelling
A library of compartmental epidemic models taken from the published literature, and classes to represent affected populations, public health response measures including non-pharmaceutical interventions on social contacts, non-pharmaceutical and pharmaceutical interventions that affect disease transmissibility, vaccination regimes, and disease seasonality, which can be combined to compose epidemic scenario models.
Authors:
epidemics_0.4.0.9000.tar.gz
epidemics_0.4.0.9000.zip(r-4.5)epidemics_0.4.0.9000.zip(r-4.4)epidemics_0.4.0.9000.zip(r-4.3)
epidemics_0.4.0.9000.tgz(r-4.4-x86_64)epidemics_0.4.0.9000.tgz(r-4.4-arm64)epidemics_0.4.0.9000.tgz(r-4.3-x86_64)epidemics_0.4.0.9000.tgz(r-4.3-arm64)
epidemics_0.4.0.9000.tar.gz(r-4.5-noble)epidemics_0.4.0.9000.tar.gz(r-4.4-noble)
epidemics_0.4.0.9000.tgz(r-4.4-emscripten)epidemics_0.4.0.9000.tgz(r-4.3-emscripten)
epidemics.pdf |epidemics.html✨
epidemics/json (API)
NEWS
# Install 'epidemics' in R: |
install.packages('epidemics', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/epidemics/issues
Pkgdown:https://epiverse-trace.github.io
decision-supportepidemic-modellingepidemic-simulationsepidemiologyepiverseinfectious-disease-dynamicsmodel-librarynon-pharmaceutical-interventionsrcpprcppeigenscenario-analysisvaccinationcpp
Last updated 6 months agofrom:f706261bac. Checks:OK: 1 WARNING: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 10 2024 |
R-4.5-win-x86_64 | WARNING | Dec 10 2024 |
R-4.5-linux-x86_64 | WARNING | Dec 10 2024 |
R-4.4-win-x86_64 | WARNING | Dec 10 2024 |
R-4.4-mac-x86_64 | WARNING | Dec 10 2024 |
R-4.4-mac-aarch64 | WARNING | Dec 10 2024 |
R-4.3-win-x86_64 | WARNING | Dec 10 2024 |
R-4.3-mac-x86_64 | WARNING | Dec 10 2024 |
R-4.3-mac-aarch64 | WARNING | Dec 10 2024 |
Exports:as.interventionas.vaccinationepidemic_peakepidemic_sizeinterventionis_contacts_interventionis_interventionis_populationis_rate_interventionis_vaccinationmodel_defaultmodel_diphtheriamodel_ebolamodel_vacamolenew_infectionsoutcomes_avertedpopulationvaccination
Dependencies:backportsBHcheckmateclidata.tableglueRcppRcppEigenwithr
Design principles for epidemics
Rendered fromdesign-principles.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-05-30
Started: 2024-03-11
Getting started with epidemic scenario modelling components
Rendered fromepidemics.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-04-23
Started: 2023-03-06
Getting started with modelling interventions targeting social contacts
Rendered frommodelling_interventions.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-04-23
Started: 2023-04-14
Guide to developing epidemics features
Rendered fromdeveloper-walkthrough.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-05-30
Started: 2024-05-30
Modelling a diphtheria outbreak in a humanitarian camp setting
Rendered frommodel_diphtheria.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-03-18
Started: 2024-03-14
Modelling intervention scenarios
Rendered frommodelling_scenarios.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-05-07
Started: 2024-03-14
Modelling interventions that change infection parameters
Rendered frommodelling_rate_interventions.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-05-07
Started: 2024-03-14
Modelling leaky vaccination and hospitalisation outcomes with Vacamole
Rendered frommodel_vacamole.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-04-23
Started: 2024-03-14
Modelling overlapping and sequential interventions targeting social contacts
Rendered frommodelling_multiple_interventions.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-03-14
Started: 2024-03-14
Modelling parameter uncertainty
Rendered frommodelling_param_uncertainty.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-05-07
Started: 2024-05-07
Modelling responses to a stochastic Ebola virus epidemic
Rendered frommodel_ebola.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-04-23
Started: 2024-03-14
Modelling the effect of a vaccination campaign
Rendered frommodelling_vaccination.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-05-24
Started: 2023-04-14
Modelling time-dependence and seasonality in transmission dynamics
Rendered frommodelling_time_dependence.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-04-23
Started: 2024-03-14
Reducing parameters required for final size estimation
Rendered fromfinalsize_comparison.Rmd
usingknitr::rmarkdown
on Dec 10 2024.Last update: 2024-03-18
Started: 2023-10-25