Package: epidemics 0.4.0.9000

Rosalind Eggo
epidemics: Composable Epidemic Scenario Modelling
A library of compartmental epidemic models taken from the published literature, and classes to represent affected populations, public health response measures including non-pharmaceutical interventions on social contacts, non-pharmaceutical and pharmaceutical interventions that affect disease transmissibility, vaccination regimes, and disease seasonality, which can be combined to compose epidemic scenario models.
Authors:
epidemics_0.4.0.9000.tar.gz
epidemics_0.4.0.9000.zip(r-4.7)epidemics_0.4.0.9000.zip(r-4.6)epidemics_0.4.0.9000.zip(r-4.5)
epidemics_0.4.0.9000.tgz(r-4.6-x86_64)epidemics_0.4.0.9000.tgz(r-4.6-arm64)epidemics_0.4.0.9000.tgz(r-4.5-x86_64)epidemics_0.4.0.9000.tgz(r-4.5-arm64)
epidemics_0.4.0.9000.tar.gz(r-4.7-arm64)epidemics_0.4.0.9000.tar.gz(r-4.7-x86_64)epidemics_0.4.0.9000.tar.gz(r-4.6-arm64)epidemics_0.4.0.9000.tar.gz(r-4.6-x86_64)
epidemics_0.4.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
epidemics/json (API)
NEWS
| # Install 'epidemics' in R: |
| install.packages('epidemics', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/epidemics/issues
Pkgdown/docs site:https://epiverse-trace.github.io
decision-supportepidemic-modellingepidemic-simulationsepidemiologyepiverseinfectious-disease-dynamicsmodel-librarynon-pharmaceutical-interventionsrcpprcppeigenscenario-analysisvaccination
Last updated from:516555d78a. Checks:2 ERROR, 11 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | ERROR | 174 | ||
| linux-devel-x86_64 | ERROR | 182 | ||
| source / vignettes | OK | 280 | ||
| linux-release-arm64 | OK | 203 | ||
| linux-release-x86_64 | OK | 189 | ||
| macos-release-arm64 | OK | 130 | ||
| macos-release-x86_64 | OK | 221 | ||
| macos-oldrel-arm64 | OK | 132 | ||
| macos-oldrel-x86_64 | OK | 426 | ||
| windows-devel | OK | 159 | ||
| windows-release | OK | 152 | ||
| windows-oldrel | OK | 183 | ||
| wasm-release | OK | 140 |
Exports:as.interventionas.vaccinationcombine_populationsepidemic_peakepidemic_sizegravity_contactinterventionis_contacts_interventionis_interventionis_populationis_rate_interventionis_vaccinationmodel_defaultmodel_diphtheriamodel_ebolamodel_vacamolenew_infectionsoutcomes_avertedpopulationvaccination
Dependencies:backportsBHcheckmatecinterpolateclidata.tabledeSolvedigestgluejsonliteodinR6RcppRcppEigenringwithr
Design principles for epidemics
Rendered fromdesign-principles.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2025-07-17
Started: 2024-03-11
Getting started with epidemic scenario modelling components
Rendered fromepidemics.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2023-03-06
Getting started with modelling interventions targeting social contacts
Rendered frommodelling_interventions.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2023-04-14
Guide to developing epidemics features
Rendered fromdeveloper-walkthrough.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2025-07-17
Started: 2024-05-30
Modelling a diphtheria outbreak in a humanitarian camp setting
Rendered frommodel_diphtheria.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Modelling in multiple populations
Rendered frommodelling_populations.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2025-04-29
Modelling intervention scenarios
Rendered frommodelling_scenarios.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Modelling interventions that change infection parameters
Rendered frommodelling_rate_interventions.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Modelling leaky vaccination and hospitalisation outcomes with Vacamole
Rendered frommodel_vacamole.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Modelling overlapping and sequential interventions targeting social contacts
Rendered frommodelling_multiple_interventions.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Modelling parameter uncertainty
Rendered frommodelling_param_uncertainty.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-05-07
Modelling responses to a stochastic Ebola virus epidemic
Rendered frommodel_ebola.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Modelling the effect of a vaccination campaign
Rendered frommodelling_vaccination.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2023-04-14
Modelling time-dependence and seasonality in transmission dynamics
Rendered frommodelling_time_dependence.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2024-03-14
Reducing parameters required for final size estimation
Rendered fromfinalsize_comparison.Rmdusingknitr::rmarkdownon Jun 05 2026.Last update: 2026-06-05
Started: 2023-10-25