Package: finalsize 0.2.1.9000
finalsize: Calculate the Final Size of an Epidemic
Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) <doi:10.1007/s11538-012-9749-6>.
Authors:
finalsize_0.2.1.9000.tar.gz
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finalsize.pdf |finalsize.html✨
finalsize/json (API)
NEWS
# Install 'finalsize' in R: |
install.packages('finalsize', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/finalsize/issues
- polymod_uk - Example POLYMOD social contact data for the U.K.
epidemic-modellingepidemiologyepiverseoutbreak-analysisrcppsdg-3
Last updated 4 months agofrom:4addd753bf. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 11 2024 |
R-4.5-win-x86_64 | OK | Oct 11 2024 |
R-4.5-linux-x86_64 | OK | Oct 11 2024 |
R-4.4-win-x86_64 | OK | Oct 11 2024 |
R-4.4-mac-x86_64 | OK | Oct 11 2024 |
R-4.4-mac-aarch64 | OK | Oct 11 2024 |
R-4.3-win-x86_64 | OK | Oct 11 2024 |
R-4.3-mac-x86_64 | OK | Oct 11 2024 |
R-4.3-mac-aarch64 | OK | Oct 11 2024 |
Calculating the final size of an epidemic
Rendered fromfinalsize.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2024-06-12
Started: 2022-11-29
Comparison with a compartmental model
Rendered fromcompare_sir_model.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2023-04-17
Started: 2023-04-17
Guide to constructing susceptibility matrices
Rendered fromsusceptibility_matrices.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2023-11-22
Started: 2023-02-17
Modelling heterogeneous social contacts
Rendered fromvarying_contacts.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2023-11-22
Started: 2023-02-06
Modelling heterogeneous susceptibility
Rendered fromvarying_susceptibility.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2024-04-09
Started: 2022-11-29
Modelling uncertainty in Râ‚€
Rendered fromuncertainty_params.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2024-06-12
Started: 2022-11-29
Projecting re-emergence risk after waning or new births
Rendered fromdemographic_turnover.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2024-06-12
Started: 2024-02-22
Theoretical background
Rendered fromtheoretical_background.Rmd
usingknitr::rmarkdown
on Oct 11 2024.Last update: 2024-04-09
Started: 2024-04-08
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate the final size of an epidemic | .final_size |
Final size of an epidemic | final_size |
Example POLYMOD social contact data for the U.K. | polymod_uk |
Converts between epidemiological parameters related to R_0 | lambda_to_r0 r0_conversions r0_to_lambda r_eff |