Package: readepi 1.0.6

Bubacarr Bah

readepi: Read Data from Relational Database Management Systems and Health Information Systems

Import Data from Relational Database Management Systems (RDBMS) and Health Information Systems ('HIS'). The current version of the package supports importing data from RDBMS including 'MS SQL', 'MySQL', 'PostGRESQL', and 'SQLite', as well as from two HIS platforms: 'DHIS2' and 'SORMAS'.

Authors:Karim Mané [aut], Emmanuel Kabuga [aut], Bubacarr Bah [aut, cre], Bankolé Ahadzie [ctb], Nuredin Mohammed [ctb], Abdoelnaser Degoot [ctb], Hugo Gruson [rev], Pratik Gupte [rev], Andree Valle-Campos [rev], London School of Hygiene and Tropical Medicine, LSHTM [cph], data.org [fnd]

readepi_1.0.6.tar.gz
readepi_1.0.6.zip(r-4.7)readepi_1.0.6.zip(r-4.6)readepi_1.0.6.zip(r-4.5)
readepi_1.0.6.tgz(r-4.6-any)readepi_1.0.6.tgz(r-4.5-any)
readepi_1.0.6.tar.gz(r-4.7-any)readepi_1.0.6.tar.gz(r-4.6-any)
readepi_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
readepi/json (API)

# Install 'readepi' in R:
install.packages('readepi', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiverse-trace/readepi/issues

Pkgdown/docs site:https://epiverse-trace.github.io

Datasets:

On CRAN:

Conda:

data-importepidemiologyepiversehealth-information-systems

6.72 score 6 stars 11 scripts 494 downloads 16 exports 42 dependencies

Last updated from:13ac0da0e7. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK126
source / vignettesOK552
linux-release-x86_64OK147
macos-release-arm64OK108
macos-oldrel-arm64OK72
windows-develOK99
windows-releaseOK75
windows-oldrelOK84
wasm-releaseOK202

Exports:dhis2_loginget_api_versionget_data_elementsget_organisation_unitsget_program_org_unitsget_program_stagesget_programsget_tracked_entitiesloginread_dhis2read_rdbmsread_sormasshow_tablessormas_get_api_specificationsormas_get_data_dictionarysormas_get_diseases

Dependencies:askpassbackportsbitbit64blobcachemcheckmateclicpp11curlDBIdplyrfastmapgenericsgluehmshttr2laterlifecyclemagrittrmemoiseodbcopensslpillarpkgconfigpoolpurrrR6rappdirsRcpprlangRMySQLRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithr

Query parameters
Introduction | RDBMS query parameters | Examples | DHIS2 query parameters | SORMAS query parameters
Rendered fromquery_parameters.Rmdusingknitr::rmarkdown

Last update: 2026-04-23
Started: 2025-09-19

readepi: Reading data from health information systems
Overview | Need for MS drivers | Authentication | Reading data from RDBMS | Reading data from HIS | Importing data from DHIS2 | Importing data from SORMAS
Rendered fromreadepi.Rmdusingknitr::rmarkdown

Last update: 2026-04-23
Started: 2023-05-09

Package design vignette for {readepi}
Concept and motivation | Scope | Output | Design decisions | Authentication | Data import | Dependencies | Contribute
Rendered fromdesign_principle.Rmdusingknitr::rmarkdown

Last update: 2026-04-21
Started: 2024-06-10

Installing drivers
MS SQL drivers for OSX-based systems | MS SQL drivers for Linux-based systems
Rendered frominstall_drivers.Rmdusingknitr::rmarkdown

Last update: 2026-01-23
Started: 2025-09-19