Package: readepi 1.0.6

Bubacarr Bah

readepi: Read Data from Relational Database Management Systems and Health Information Systems

Import Data from Relational Database Management Systems (RDBMS) and Health Information Systems ('HIS'). The current version of the package supports importing data from RDBMS including 'MS SQL', 'MySQL', 'PostGRESQL', and 'SQLite', as well as from two HIS platforms: 'DHIS2' and 'SORMAS'.

Authors:Karim Mané [aut], Emmanuel Kabuga [aut], Bubacarr Bah [aut, cre], Bankolé Ahadzie [ctb], Nuredin Mohammed [ctb], Abdoelnaser Degoot [ctb], Hugo Gruson [rev], Pratik Gupte [rev], Andree Valle-Campos [rev], London School of Hygiene and Tropical Medicine, LSHTM [cph], data.org [fnd]

readepi_1.0.6.tar.gz
readepi_1.0.6.zip(r-4.7-any)readepi_1.0.6.zip(r-4.6-any)readepi_1.0.6.zip(r-4.5-any)
readepi_1.0.6.tgz(r-4.6-any)readepi_1.0.6.tgz(r-4.5-any)
readepi_1.0.6.tar.gz(r-4.7-any)readepi_1.0.6.tar.gz(r-4.6-any)
readepi_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
readepi/json (API)

# Install 'readepi' in R:
install.packages('readepi', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiverse-trace/readepi/issues

Pkgdown/docs site:https://epiverse-trace.github.io

Datasets:

On CRAN:

Conda:

data-importepidemiologyepiversehealth-information-systems

6.76 score 6 stars 12 scripts 395 downloads 16 exports 41 dependencies

Last updated from:13ac0da0e7. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK152
source / vignettesOK252
linux-releaseOK143
macos-releaseOK90
macos-oldrelOK85
windows-develOK82
windows-releaseOK72
windows-oldrelOK73
wasm-releaseOK127

Exports:dhis2_loginget_api_versionget_data_elementsget_organisation_unitsget_program_org_unitsget_program_stagesget_programsget_tracked_entitiesloginread_dhis2read_rdbmsread_sormasshow_tablessormas_get_api_specificationsormas_get_data_dictionarysormas_get_diseases

Dependencies:askpassbackportsbitbit64blobcachemcheckmateclicpp11curlDBIdplyrfastmapgenericsgluehmshttr2laterlifecyclemagrittrmemoiseodbcopensslpillarpkgconfigpoolpurrrR6RcpprlangRMySQLRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithr

Query parameters
Introduction | RDBMS query parameters | Examples | DHIS2 query parameters | SORMAS query parameters
Rendered fromquery_parameters.Rmdusingknitr::rmarkdown

Last update: 2026-04-23
Started: 2025-09-19

readepi: Reading data from health information systems
Overview | Need for MS drivers | Authentication | Reading data from RDBMS | Reading data from HIS | Importing data from DHIS2 | Importing data from SORMAS
Rendered fromreadepi.Rmdusingknitr::rmarkdown

Last update: 2026-04-23
Started: 2023-05-09

Package design vignette for {readepi}
Concept and motivation | Scope | Output | Design decisions | Authentication | Data import | Dependencies | Contribute
Rendered fromdesign_principle.Rmdusingknitr::rmarkdown

Last update: 2026-04-21
Started: 2024-06-10

Installing drivers
MS SQL drivers for OSX-based systems | MS SQL drivers for Linux-based systems
Rendered frominstall_drivers.Rmdusingknitr::rmarkdown

Last update: 2026-01-23
Started: 2025-09-19