Package: linelist 1.1.4.9000
Hugo Gruson
linelist: Tagging and Validating Epidemiological Data
Provides tools to help storing and handling case line list data. The 'linelist' class adds a tagging system to classical 'data.frame' objects to identify key epidemiological data such as dates of symptom onset, epidemiological case definition, age, gender or disease outcome. Once tagged, these variables can be seamlessly used in downstream analyses, making data pipelines more robust and reliable.
Authors:
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linelist.pdf |linelist.html✨
linelist/json (API)
NEWS
| # Install 'linelist' in R: |
| install.packages('linelist', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/linelist/issues
datadata-structuresepidemiologyepiverseoutbreakssdg-3structured-data
Last updated 3 months agofrom:9e49d07184. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win | OK | Sep 08 2024 |
| R-4.5-linux | OK | Sep 08 2024 |
| R-4.4-win | OK | Sep 08 2024 |
| R-4.4-mac | OK | Sep 08 2024 |
| R-4.3-win | OK | Sep 08 2024 |
| R-4.3-mac | OK | Sep 08 2024 |
Exports:get_lost_tags_actionhas_taglost_tags_actionmake_linelistselect_tagsset_tagstagstags_defaultstags_dftags_namestags_typesvalidate_linelistvalidate_tagsvalidate_types
Dependencies:backportscheckmateclidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr
An introduction to linelist
Rendered fromlinelist.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-07-04
Started: 2022-09-06
Compatibility with dplyr
Rendered fromcompat-dplyr.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-07-10
Started: 2023-06-19
Design Principles for linelist
Rendered fromdesign-principles.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-07-04
Started: 2024-02-28
Software permissions and regulations
Rendered fromsoftware-permissions.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-03-19
Started: 2024-03-19
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Subsetting of linelist objects | $<-.linelist sub_linelist [.linelist [<-.linelist [[<-.linelist |
| A selector function to use in 'tidyverse' functions | has_tag |
| Check and set behaviour for lost tags | get_lost_tags_action lost_tags_action |
| Create a linelist from a data.frame | make_linelist |
| Rename columns of a linelist | names<-.linelist |
| Printing method for linelist objects | print.linelist |
| Extract tagged variables of a linelist object | select_tags |
| Subset columns of a linelist object | select.linelist |
| Changes tags of a linelist object | set_tags |
| Get the list of tags in a linelist | tags |
| Generate default tags for a linelist | tags_defaults |
| Extract a data.frame of all tagged variables | tags_df |
| Get the list of tag names used in linelist | tags_names |
| List acceptable variable types for tags | tags_types |
| Checks the content of a linelist object | validate_linelist |
| Checks the tags of a linelist object | validate_tags |
| Check tagged variables are the right class | validate_types |
