Package: serofoi 0.1.0
serofoi: Estimates the Force-of-Infection of a Given Pathogen from Population Based Seroprevalence Studies
Estimate time-varying Force-of-Infection of a given pathogen from population based seroprevalence studies using a bayesian framework.
Authors:
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serofoi.pdf |serofoi.html✨
serofoi/json (API)
NEWS
# Install 'serofoi' in R: |
install.packages('serofoi', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/serofoi/issues
- chagas2012 - Seroprevalence data on serofoi
- chik2015 - Seroprevalence data on serofoi
- simdata_constant - Constant force-of-infection simulated serosurvey
- simdata_large_epi - Large epidemic simulated serosurvey
- simdata_sw_dec - Step-wise decreasing force-of-infection simulated serosurvey
- veev2012 - Seroprevalence data on serofoi
antibodiesbayesian-methodsepidemiologyepiverseserological-surveysstan-language
Last updated 2 months agofrom:a608a0ddd2. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 06 2024 |
R-4.5-win-x86_64 | NOTE | Oct 06 2024 |
R-4.5-linux-x86_64 | NOTE | Oct 06 2024 |
R-4.4-win-x86_64 | NOTE | Oct 06 2024 |
R-4.4-mac-x86_64 | NOTE | Oct 06 2024 |
R-4.4-mac-aarch64 | NOTE | Oct 06 2024 |
R-4.3-win-x86_64 | NOTE | Oct 06 2024 |
R-4.3-mac-x86_64 | NOTE | Oct 06 2024 |
R-4.3-mac-aarch64 | NOTE | Oct 06 2024 |
Exports:extract_seromodel_summaryfit_seromodelgenerate_sim_dataget_chunk_structureget_cohort_agesget_foi_central_estimatesget_prev_expandedget_sim_n_seropositiveget_sim_probabilityget_table_rhatsgroup_sim_dataplot_foiplot_info_tableplot_rhatsplot_seromodelplot_seroprevplot_seroprev_fittedprepare_serodatarun_seromodel
Dependencies:abindbackportsbase64encbayesplotBHbslibcachemcallrcheckmatecliclustercolorspacecowplotdata.tabledescdigestdistributionaldplyrevaluatefansifarverfastmapfontawesomeforeignFormulafsgenericsggplot2ggridgesgluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsinlineisobandjquerylibjsonliteknitrlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmemoisemgcvmimemunsellnlmennetnumDerivpillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrQuickJSRR6rappdirsRColorBrewerRcppRcppEigenRcppParallelreshape2rlangrmarkdownrpartrstanrstantoolsrstudioapisassscalesStanHeadersstringistringrtensorAtibbletidyselecttinytexutf8vctrsviridisviridisLitewithrxfunyaml
An introduction to Force-of-Infection (FoI) Models
Rendered fromfoi_models.Rmd
usingknitr::rmarkdown
on Oct 06 2024.Last update: 2024-04-30
Started: 2023-04-04
An introduction to serofoi
Rendered fromserofoi.Rmd
usingknitr::rmarkdown
on Oct 06 2024.Last update: 2024-04-30
Started: 2023-03-22
Real-life use cases for serofoi
Rendered fromuse_cases.Rmd
usingknitr::rmarkdown
on Oct 06 2024.Last update: 2024-04-30
Started: 2023-03-22