Package: superspreading 0.3.0.9000

superspreading: Understand Individual-Level Variation in Infectious Disease Transmission

Estimate and understand individual-level variation in transmission. Implements density and cumulative compound Poisson discrete distribution functions ('Kremer et al.' (2021) <doi:10.1038/s41598-021-93578-x>), as well as functions to calculate infectious disease outbreak statistics given epidemiological parameters on individual-level transmission; including the probability of an outbreak becoming an epidemic/extinct ('Kucharski et al.' (2020) <doi:10.1016/S1473-3099(20)30144-4>), or the cluster size statistics, e.g. what proportion of cases cause X\% of transmission ('Lloyd-Smith et al.' (2005) <doi:10.1038/nature04153>).

Authors:Joshua W. Lambert [aut, cre, cph], Adam Kucharski [aut, cph], Dillon C. Adam [aut], Sebastian Funk [ctb, cph], Pratik Gupte [rev], Hugo Gruson [rev], James M. Azam [rev, ctb], Chris Hartgerink [rev]