Package: superspreading 0.2.0.9000

Joshua W. Lambert

superspreading: Estimate Individual-Level Variation in Transmission

Implements functions to estimate individual-level variation in transmission.

Authors:Joshua W. Lambert [aut, cre, cph], Adam Kucharski [aut, cph], Dillon C. Adam [aut], Sebastian Funk [ctb], Pratik Gupte [rev], Hugo Gruson [rev], James M. Azam [rev]

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superspreading.pdf |superspreading.html✨
superspreading/json (API)
NEWS

# Install 'superspreading' in R:
install.packages('superspreading', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiverse-trace/superspreading/issues

On CRAN:

disease-transmissionepidemiologyepiverse

11 exports 4 stars 1.75 score 4 dependencies 14 scripts

Last updated 13 days agofrom:bb424ee226. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 05 2024
R-4.5-winNOTESep 05 2024
R-4.5-linuxNOTESep 05 2024
R-4.4-winNOTESep 05 2024
R-4.4-macNOTESep 05 2024
R-4.3-winNOTESep 05 2024
R-4.3-macNOTESep 05 2024

Exports:calc_network_Rdpoislnormdpoisweibullic_tblppoislnormppoisweibullprobability_containprobability_epidemicprobability_extinctproportion_cluster_sizeproportion_transmission

Dependencies:backportsbpmodelscheckmaterlang

Design Principles for {superspreading}

Rendered fromdesign-principles.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2024-08-23
Started: 2023-12-14

Epidemic Risk

Rendered fromepidemic_risk.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2024-01-09
Started: 2023-06-13

Estimate individual-level transmission

Rendered fromestimate_individual_level_transmission.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2023-12-07
Started: 2023-05-26

Getting started with {superspreading}

Rendered fromsuperspreading.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2024-08-23
Started: 2023-05-18

Outbreaks in heterogeneous networks

Rendered fromheterogeneous_network_outbreaks.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2024-01-25
Started: 2024-01-09