Package: superspreading 0.2.0.9000

Joshua W. Lambert

superspreading: Estimate Individual-Level Variation in Transmission

Implements functions to estimate individual-level variation in transmission.

Authors:Joshua W. Lambert [aut, cre, cph], Adam Kucharski [aut, cph], Dillon C. Adam [aut], Sebastian Funk [ctb, cph], Pratik Gupte [rev], Hugo Gruson [rev], James M. Azam [rev, ctb], Chris Hartgerink [rev]

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superspreading.pdf |superspreading.html✨
superspreading/json (API)
NEWS

# Install 'superspreading' in R:
install.packages('superspreading', repos = c('https://epiverse-trace.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiverse-trace/superspreading/issues

Pkgdown site:https://epiverse-trace.github.io

On CRAN:

disease-transmissionepidemiologyepiverse

6.10 score 4 stars 16 scripts 11 exports 3 dependencies

Last updated 11 days agofrom:4d9f539bc9. Checks:3 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 02 2025
R-4.5-winOKJan 02 2025
R-4.5-linuxOKJan 02 2025
R-4.4-winNOTEJan 02 2025
R-4.4-macNOTEJan 02 2025
R-4.3-winNOTEJan 02 2025
R-4.3-macNOTEJan 02 2025

Exports:calc_network_Rdpoislnormdpoisweibullic_tblppoislnormppoisweibullprobability_containprobability_epidemicprobability_extinctproportion_cluster_sizeproportion_transmission

Dependencies:backportscheckmaterlang

Design Principles for {superspreading}

Rendered fromdesign-principles.Rmdusingknitr::rmarkdownon Jan 02 2025.

Last update: 2024-10-31
Started: 2023-12-14

Epidemic Risk

Rendered fromepidemic_risk.Rmdusingknitr::rmarkdownon Jan 02 2025.

Last update: 2024-10-07
Started: 2023-06-13

Estimate individual-level transmission

Rendered fromestimate_individual_level_transmission.Rmdusingknitr::rmarkdownon Jan 02 2025.

Last update: 2024-10-07
Started: 2023-05-26

Getting started with {superspreading}

Rendered fromsuperspreading.Rmdusingknitr::rmarkdownon Jan 02 2025.

Last update: 2024-10-10
Started: 2023-05-18

Methods for calculating the proportion of transmission

Rendered fromproportion_transmission.Rmdusingknitr::rmarkdownon Jan 02 2025.

Last update: 2024-10-10
Started: 2024-09-27

Outbreaks in heterogeneous networks

Rendered fromheterogeneous_network_outbreaks.Rmdusingknitr::rmarkdownon Jan 02 2025.

Last update: 2024-10-07
Started: 2024-01-09